Genotype

Datasets Available to Download ( alphabetical order by first author )

Maps from two interspecific backcross DNA panels

Broman KW, Rowe LB, Churchill GA, Paigen K.
Crossover interference in the mouse
Genetics. 2002 Mar;160(3):1123-31. PMCID: PMC1462020 [ Full Text ]

Rowe LB, Nadeau JH, Turner R, Frankel WN, Letts VA, Eppig JT, Ko MS, Thurston SJ, Birkenmeier EH.
Maps from two interspecific backcross DNA panels available as a community genetic mapping resource
Mamm Genome. 1994 May;5(5):253-74.

Evidence of a large-scale functional organization of mammalian chromosomes

Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K.
Evidence of a large-scale functional organization of mammalian chromosomes
PLoS Genet. 2005 Sep;1(3):e33. PMCID: PMC1201368 [ Full Text ]

Imputed genotype resource - 74 inbred mouse strains (Szatkiewicz et al. 2008)

Szatkiewicz JP, Beane GL, Ding Y, Hutchins L, Pardo-Manuel de Villena F, Churchill GA.
An imputed genotype resource for the laboratory mouse
Mamm Genome. 2008 Mar;19(3):199-208. PMCID: PMC2725522 [ Full Text ]

Imputed Mouse SNP Resource - 88 classical inbred strains (Wang et al. 2012)

Wang JR, Pardo-Manuel de Villena F, Lawson HA, Cheverud JM, Churchill GA, McMillan L.
Computation of Single-Nucleotide Polymorphisms in Inbred Mice Using Local Phylogeny
Genetics. 2012 Feb;190(2):449-58. PMCID: PMC3276610 [Available on 2013/2/1]

Genotypes of 136 DNA samples - Original Training Set for the Mouse Diversity Array

Yang H, Ding Y, Hutchins LN, Szatkiewicz J, Bell TA, Paigen BJ, Graber JH, de Villena FP, Churchill GA.
A customized and versatile high-density genotyping array for the mouse
Nat Methods. 2009 Sep;6(9):663-6. PMCID: PMC2735580 [ Full Text ]

Genotypes of 36 wild caught mice, 62 wild derived laboratory strains and 100 classical strains

Phifer-Rixey M, Bonhomme F, Boursot P, Churchill GA, Piálek J, Tucker P, Nachman M.
Adaptive evolution and effective population size in wild house mice
Mol Biol Evol. 2012 Oct;29(10):2949-55. PMCID: PMC3457769 [Available on 2013/10/1]

Yang H, Wang JR, Didion JP, Buus RJ, Bell TA, Welsh CE, Bonhomme F, Yu AH, Nachman MW, Pialek J, Tucker P, Boursot P, McMillan L, Churchill GA, de Villena FP.
Subspecific origin and haplotype diversity in the laboratory mouse
Nat Genet. 2011 May 29;43(7):648-55. PMCID: PMC3125408 [ Full Text ] [ News Article ]