Presentations

2013

Genetic analysis of RNA editing in the Diversity Outbred mice (PDF 0.3 MB)

Tongjun Gu, Robert E. Braun, Gary A. Churchill
Gordon Research Conference on RNA Editing, Galveston, TX, Jan 6-11, 2013. Poster

RNA-seq Alignment to Individualized Genomics (PDF 6.5 MB)

Steve Munger
40th Maine Biological and Medical Sciences Symposium, Bar Harbor, ME, April 12-13, 2013. Talk

2012

Comparing Diverse Pluripotent Stem Cell Fate Programs Using Cell-Type Specific Data Integration And Machine Learning (PDF 3.6 MB)

Karen G. Dowell, Allen K. Simons, Zack Z. Wang, and Matthew A. Hibbs
Intelligent Systems for Molecular Biology, the annual conference of the International Society of Computational Biology, Long Beach, CA, July 15, 2012. Poster

Mapping Toxicity Traits Using the Diversity Outbred Mice (PDF 5.1 MB)

Daniel Gatti
Genetically Diverse Mouse Models Workshop, ILSI Health and Environmental Sciences Institute, Washington, DC, November 28, 2012. Talk

Independent Studies in Computational Biology: Engaging Talented Youth in Authentic Research (PDF 2.2 MB)

Susan McClatchy and Gary Churchill
Discovery Days, The Jackson Laboratory, Bar Harbor, ME, July 12-13, 2012. Poster

Allele specific gene expression in F1 mice from a reciprocal cross (PDF 0.9 MB)

Narayanan Raghupathy, Ron Korstenje, Karen Svenson, Fernando Pardo Manuel de Villena, and Gary Churchill
National Centers for Systems Biology Annual Meeting, University of Chicago, Chicago, IL, July 19-20, 2012. Poster

2011

Center for Genome Dynamics (PDF 19 MB)

Gary Churchill
National Centers for Systems Biology Annual Meeting, Duke University, Durham, NC, June 16-17, 2011. Talk

Developing the Laboratory Mouse as a Tool for Systems Genetics (Video on meeting website)

Gary Churchill
Animal Models and Their Value in Predicting Drug Efficacy and Toxicity, New York Academy of Sciences, New York, NY, September 15-16, 2011. Talk

Independent Studies in Computational Biology (PDF 1.6 MB)

Susan McClatchy
National Centers for Systems Biology Annual Meeting, Duke University, Durham, NC, June 16-17, 2011. Talk

2010

Center for Genome Dynamics (PDF 11.1 MB)

Gary Churchill
National Centers for Systems Biology Annual Meeting, Institute for Systems Biology, Seattle, WA, July 12-13, 2010. Talk

The Trouble with Triplets: Can we Infer Causality from Omics Data? (PDF 1.8 MB)

Gary A. Churchill
CTC2010 - Complex Trait Consortium Annual Meeting, Chicago, IL, May 5-8, 2010. Talk

Bayesian Inference of the Phenotype-Genotype Network Topology (PDF 0.7 MB)

R.S. Hageman, M.S. Leduc, B. Paigen, R. Korstanje and G.A. Churchill
14th International Conference on Research in Computational Molecular Biology, Lisbon, Portugal, August 12-15, 2010. Poster

J/maanova Software Demonstration

Keith Sheppard and Gary Churchill
CTC2010 - Complex Trait Consortium Annual Meeting, Chicago, IL, May 5-8, 2010. Software Demonstration

Mixed Model Analysis and Permutation for Recombinant Inbred Strain Panels (PDF 0.6 MB)

Shirng-Wern Tsaih
CTC2010 - Complex Trait Consortium Annual Meeting, Chicago, IL, May 5-8, 2010. Talk

Stochastic Variation of Transcript Abundance in C57BL/6J Mice (PDF 2.5 MB)

Peter T. Vedell, Karen L. Svenson and Gary A. Churchill
Systems Biology of Stem Cells, University of California-Irvine, Irvine, CA, May 24-25, 2010. Poster

A Survey of Gene Expressin in 17 Mouse Tissues with Biological Replication (PDF 3.6 MB)

Ricardo A. Verdugo, Peter T. Vedell, Joel H. Graber, Beverly Paigen and Gary A. Churchill
CTC2010 - Complex Trait Consortium Annual Meeting, Chicago, IL, May 5-8, 2010. Poster

Customized Genotyping Array Development - Clinical Trial with Genetic Information

Hyuna Yang
Department of Biostatistics and Bioinformatics, Duke University, Durham, NC, April 2010. Talk

2009

Compex Trait Analysis in Inbred Line Crosses (PDF 4MB)

Gary Churchill
50th Annual Short Course on Medical and Experimental Mammalian Genetics, The Jackson Laboratory, Bar Harbor, ME, July 23, 2009. Talk

Training and Outreach, Center for Genome Dynamics (PDF 2.2MB)

Randy Von Smith
National Centers for Systems Biology Annual Meeting, NIH, Bethesda, MD, July 12-14, 2009. Talk

National Centers for Systems Biology Portal (PDF 1.3MB)

Imogen Hurley
National Centers for Systems Biology Annual Meeting, NIH, Bethesda, MD, July 12-14, 2009. Talk

Center for Genome Dynamics (PDF 17.3MB)

Gary Churchill
National Centers for Systems Biology Annual Meeting, NIH, Bethesda, MD, July 12-14, 2009. Talk

Importance of Randomization in Microarray Experimental Designs with Illumina Platforms (PDF 4.1 MB)

Ricardo A Verdugo, Christian F Deschepper and Gary A Churchill
Advisory Board Meeting, Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, July 6, 2009. Poster

Multiple mutations perturb a small number of pathways in an HDL mutagenesis screen (PDF 4.6MB)

Rachael S. Hageman, Aleksandra Aljakna, Karen L. Svenson, Gary A. Churchill and Ron Korstanje
Advisory Board Meeting, Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, July 6, 2009. Poster

GeniQuest: bringing computational biology to the high school classroom (PDF 1.6 MB)

Randy Von Smith, Chad Dorsey, Stephen Bannasch, Aubrey Smith, Francis Eberle, Jon Geiger and Gary A Churchill
Advisory Board Meeting, Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, July 6, 2009. Poster

Independent Studies in Computational Biology: using distance learning to bring computational biology to the high school classroom (PDF 1.5MB)

Randy Von Smith, Deborah McGann, Bob Gotwals, Keith Shockley, Shirngwern Tsaih, James Nadeau and Gary A Churchill
Advisory Board Meeting, Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, July 6, 2009. Poster

Transcript Abundance Variation in C57BL/6J Male Mice under Normal Laboratory Conditions (PDF 7MB)

Peter T Vedell, Karen L Svenson, Gary A Churchill
Advisory Board Meeting, Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, July 6, 2009. Poster

Multiple mutations perturb a small number of pathways in an HDL mutagenesis screen (PDF 7.2MB)

Rachael S. Hageman, Aleksandra Aljakna, Karen L. Svenson, Gary A. Churchill, and Ron Korstanje
International Symposium on Atherosclerosis --- Post-Satellite Symposium: High Density Lipoproteins and Atherosclerosis, New York, June 19-20, 2009. Poster

Linking Phenotype and Genotype: GeniQuest, an exploration of genetics (PDF 16.9MB)

Randy Smith
CAMPY/PIMMS Career Day, Wesleyan University, Middletown, CT, May 19, 2009. Talk

Importance of Randomization in Microarray Experimental Designs with Illumina Platforms (PDF 4.1MB)

Ricardo A Verdugo, Christian F Deschepper, and Gary A Churchill
8th Annual Meeting of the Complex Trait Community in Manchester, UK, May 2 - 5, 2009. Poster

Importance of Randomization in Microarray Experimental Designs with Illumina Platforms

Ricardo A Verdugo, Christian F Deschepper, and Gary A Churchill
Gordon Research Conference. Quantitative Genetics & Genomics. Galveston, TX. February 2009. Poster

2008

Genetic structure of the Pre-Collaborative Cross (PreCC) population

David Aylor, David Threadgill, Leonard McMillan, Gary Churchill, Elissa Chesler, Fernando Pardo-Manuel de Villena
22th International Mammalian Genome Conference, Prague Czech Republic, November 2008. Talk

CGDSNP : A High Qaulity Integrated Mouse SNPs Database (PDF 0.6MB)

Lucie N Hutchins, Gary A Churchill, Joel H Graber
16th Annual International Conference Intelligent Systems for Molecular Biology, Toronto, Canada, July 2008. Poster

GeniQuest: bringing computational biology to the high school classroom (PDF 1.9MB)

Randy Von Smith, Chad Dorsey, Stephen Bannasch, Aubrey Smith, Francis Eberle, Jon Geiger, Gary A Churchill
NIGMS Systems Biology Center Meeting. Princeton Univesity. July 2008. Poster

Independent Studies in Computational Biology: using distance learning to bring computational biology to the high school classroom (PDF 1.6MB)

Randy Von Smith, Deborah McGann, Bob Gotwals, Keith Shockley, Shirngwern Tsaih, James Nadeau, Gary Churchill
NIGMS Systems Biology Center Meeting. Princeton Univesity. July 2008. Poster

A High School Search for Genes: Identifying Genes Significant to the Atherosclerosis Phenotype (PDF 3.4MB)

Renee Symonds, Ryan Keating, Chunan Liang, Deborah McGann, Melissa Martin, Randy Von Smith, Gary Churchill
NIGMS Systems Biology Center Meeting. Princeton Univesity. July 2008. Poster

Bringing Computational Biology to the High School Classroom to Narrow QTL (PDF 0.2MB)

Deborah McGann, Randy Smith, Hyuna Yang, Sharon Tsaih, Keith Shockley, Gary Churchill
NIGMS Systems Biology Center Meeting. Princeton Univesity. July 2008. Poster

A New Mouse SNP Chip

Hyuna Yang, Yueming Ding, Gary A Churchill & Fernando Pardo-Manuel de Villena.
NIGMS Systems Biology Center Meeting. Princeton Univesity. July 2008. Poster

Phylo: A Phylogenetic Tree Viewer (PDF 0.4MB)

Aubrey A. Smith , Joel H. Graber, Gary A Churchill
7th Annual Meeting of the Complex Trait Consortium in Montreal Canada, May-June 2008. Poster

Imputed genotype resource for the laboratory mice (PDF 1.1MB)

Jin P. Szatkiewicz, Beane GL, Ding Y, Huntchins L, Pardo-Manuel de Villena F, Churchill GA.
7th Annual Meeting of the Complex Trait Consortium in Montreal Canada, May-June 2008. Talk

Mixed Model Analysis of Quantitative Traits in Recombinant Inbred Mouse Strain Panels (PDF 1.8MB)

Shirng-Wern Tsaih, Sarah R Langley, Wesley Beamer, Beth Bennett, Gary A Churchill
7th Annual Meeting of the Complex Trait Consortium in Montreal Canada, May-June 2008. Poster

mRNA transcript abundance variation in C57BL/6 mice under normal conditions (PDF 4.3MB)

Peter Vedell, Jing Qiu, Shirng-Wern Tsaih, Qian Li, Xiangqin Cui, Gary A Churchill
7th Annual Meeting of the Complex Trait Consortium in Montreal Canada, May-June 2008. Talk

On the subspecific orgin on the laboratory mouse (PDF 0.3MB)

Hyuna Yang, Timothy A Bell, Gary A Churchill & Fernando Pardo-Manuel de Villena.
7th Annual Meeting of the Complex Trait Consortium in Montreal Canada, May-June 2008. Poster

2007

The Center for Genome Dynamics Research Overview (PDF 0.2MB)

Randy Von Smith, Hyuna Yang, Petko M. Petkov, Timothy A. Bell,, Fernando Pardo-Manuel de Villena, Y. Zhang, R. Kirova, M.
A. Langston, E. J. Chesler, Renhua Li, Keith Shockley, David Witmer, Beverly Paigen, Gudrun A. Brockmann, Christina
Neuschl, Gary A. Churchill.
21st International Mammalian Genome Conference, Kyoto, Japan. October 2007. Poster

On the subspecific origin of the laboratory mouse

Timothy A Bell, Hyuna Yang, Gary Churchill, Fenando Pardo-Manuel de Villena.
5th Annual Retreat Department of Genetics, Ashville NC, September 2007. Poster

Structural model analysis for adiposity in mice (PDF 0.1MB)

Gudrun A Brockmann, Renhua Li, Christina Neuschl, Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

Modeling of systems genetics reveals genetic buffering mechanisms involved in HDL homeostatsis (PDF 0.2MB)

Renhua Li, Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

The Center for Genome Dynamics at The Jackson Laboratory (PDF 0.04MB)

Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

Linear Model Genome Scans for Expression QTL Analysis (PDF 0.2MB)

Shirng-Wern Tsaih, Hyuna Yang, Renhua Li, Ioannis M. Stylianou, Keith DiPetrillo, Beverly Paigen, Gary A Churchill.
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

Comparison of Genetic Structure of Mouse Populations by Combinatorial Analysis of High-Order Long-Range Linkage Disequilibrium Networks Using High Density Genotypes (PDF 0.2MB)

Yun Zhang, Roumyana Kirova, Gary A Churchill, Michael A Langston, Elissa J Chesler.
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

A Flexible Phylogenetic Tree Viewer (PDF 0.06MB)

Aubrey A Smith , Joel H Graber, Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

PPARgamma2 Regulates Adipocyte Differentiation of Bone Marrow Mesenchymal Stem Cells (PDF 0.2MB)

Keith R Shockley, Beata Lecka-Czernik, Clifford J Rosen, Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

A Hidden Markov Model for Inferring Haplotype Structure from Mouse SNP Data (PDF 0.3MB)

Jin P Szatkiewicz, Glen L Beane, Gary A Churchill
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

On the subspecific origin of the laboratory mouse (PDF 0.3MB)

Hyuna Yang, Timothy A Bell, Gary Churchill, Fenando Pardo-Manuel de Villena.
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

Independent Studies in Computational Biology (PDF 0.07MB)

Randy Von Smith, Deborah McGann, Keith Shockley, Shirngwern Tsaih, James Nadeau, Gary Churchill.
Meeting of the National Centers of Integrative and Systems Biology, Boston, June 2007. Poster

A Hidden Markov Model for Inferring Haplotype Structure from Mouse SNP Data (PDF 0.3MB)

Jin P Szatkiewicz, Glen L Beane, Gary A Churchill
The International Biometric Society Eastern North American Region (ENAR) Spring Meeting, Atlanta, March 2007. Poster

2006

Genome wide phylogenetIc analysis and patterns of dIversity in sequenced mouse strains

Hyuna Yang, Timothy A Bell, Gary Churchill, Fernando Pardo-Manuel de Villena.
20th International Mammalian Genome Conference, Charleston SC, November 2006. Talk

False Negative Rate and SNP Discovery Bias in the NIEHS/Perlegen Mouse Diversity Project

Timothy A. Bell, Hyuna Yang, Gary Churchill, Fernando Pardo-Manuel de Villena.
20th International Mammalian Genome Conference, Charleston SC, November 2006. Poster