CTC 2014 DOQTL Workshop

 

May 19, 2014, Berlin, Germany


This is the Powerpoint presentation that started the workshop.


QTL Mapping Demo


You will need a good internet connection to download the files and to run the demo code.


Instructions for running the code from the workshop:

  1. Download the zip file
  2. Unzip it and record the full path to the directory where the file unzips.
  3. Start R and run the following code:
              setwd("/the/directory/where/the/files/unzipped")
              source("http://bioconductor.org/biocLite.R")  
              biocLite(c("annotate","annotationTools","biomaRt","Biobase","corpcor","GenomicRanges","hwriter","IRanges","MASS","mclust","org.Hs.eg.db","org.Mm.eg.db","QTLRel","Rsamtools","XML")) 
              install.packages("MUGAExampleData_0.99.0.tar.gz", repos = NULL, type = "source")
    On a Windows machine, run this line:
              install.packages("DOQTL_0.99.0.zip", repos = NULL)
    On a Mac, run this line:
              install.packages("DOQTL_0.99.0.tgz", repos = NULL)
  4. Open the HTML file
  5. Scroll down to the line that starts with "library(DOQTL)". Copy and paste this line into R. This will load DOQTL.
  6. You may now read through the demo, copying and pasting the code (in shaded boxes) into R to run the analyses.


Please contact me if you have any comments or questions.

 

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